Folding Free Energies of 5'-UTRs Impact Post-Transcriptional Regulation on a Genomic Scale in Yeast.

Folding Free Energies of 5'-UTRs Impact Post-Transcriptional Regulation on a Genomic Scale in Yeast.

Using high-throughput technologies, abundances and other features of genes and proteins have been measured on a genome-wide scale in Saccharomyces cerevisiae. In contrast, secondary structure in 5'-untranslated regions (UTRs) of mRNA has only been investigated for a limited number of genes. Her...

Full description

Bibliographic Details
Format:	Article
Language:	English
Published:	Public Library of Science (PLoS) 2005-12-01
Series:	PLoS Computational Biology
Online Access:	http://dx.doi.org/10.1371/journal.pcbi.0010072

Similar Items

Folding free energies of 5'-UTRs impact post-transcriptional regulation on a genomic scale in yeast.
by: Markus Ringnér, et al.
Published: (2005-12-01)

Post-transcriptional Regulation by 3′ UTRs Can Be Masked by Regulatory Elements in 5′ UTRs
by: Kathrin Theil, et al.
Published: (2018-03-01)

Bacterial 3′UTRs: A Useful Resource in Post-transcriptional Regulation
by: Pilar Menendez-Gil, et al.
Published: (2021-01-01)

Characterization of mammalian Lipocalin UTRs in silico: Predictions for their role in post-transcriptional regulation.
by: Andres Mejias, et al.
Published: (2019-01-01)

Hyperconserved Elements in Human 5′UTRs Shape Essential Post-transcriptional Regulatory Networks
by: Paola Zuccotti, et al.
Published: (2020-08-01)

Cis-acting elements in its 3' UTR mediate post-transcriptional regulation of KRAS
by: Kim, Minlee, et al.
Published: (2016)

Genome-wide Studies of Transcriptional Regulation in Yeast
by: Orzechowski Westholm, Jakub
Published: (2009)

Post-transcriptional regulation of ribosome biogenesis in yeast
by: Isabelle C. Kos-Braun, et al.
Published: (2017-05-01)

Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast.
by: Emanuel Gonçalves, et al.
Published: (2017-01-01)

Cell cycle regulated transcription and genome integrity in yeast
by: Kishkevich, Anastasiya
Published: (2017)

Potential roles of 5´ UTR and 3´ UTR regions in post-trans-criptional regulation of mouse Oct4 gene in BMSC and P19 cells
by: Saeedeh Ghiasvand, et al.
Published: (2014-07-01)

5′-UTR and 3′-UTR Regulation of MICB Expression in Human Cancer Cells by Novel microRNAs
by: Wipaporn Wongfieng, et al.
Published: (2017-08-01)

5′UTR-mediated regulation of Ataxin-1 expression
by: Rachna Manek, et al.
Published: (2020-02-01)

The post-transcriptional regulator rsmA/csrA activates T3SS by stabilizing the 5' UTR of hrpG, the master regulator of hrp/hrc genes, in Xanthomonas.
by: Maxuel O Andrade, et al.
Published: (2014-02-01)

A translation initiation element specific to mRNAs with very short 5'UTR that also regulates transcription.
by: Rofa Elfakess, et al.
Published: (2008-01-01)

PCBP2 post‐transcriptionally regulates sortilin expression by binding to a C‐rich element in its 3′ UTR
by: Toshiki Yabe‐Wada, et al.
Published: (2020-03-01)

The post-transcriptional regulation of human FGF9 3’ untranslated region (3’UTR) on FGF9 protein expression
by: Chien-Hui Hsu, et al.
Published: (2005)

Coordinated Evolution of Transcriptional and Post-Transcriptional Regulation for Mitochondrial Functions in Yeast Strains.
by: Xuepeng Sun, et al.
Published: (2016-01-01)

Influence of the 5′-terminal sequences on the 5′-UTR structure of HIV-1 genomic RNA
by: Camille Michiko Obayashi, et al.
Published: (2021-05-01)

The 3′ UTRs of Brain-Derived Neurotrophic Factor Transcripts Differentially Regulate the Dendritic Arbor
by: Kate M. O’Neill, et al.
Published: (2018-03-01)

Alternative 3’UTRs Differentially Regulate the Translation of Dazap1 Transcripts During Spermatogenesis
by: Chi-Kai Yang, et al.
Published: (2013)

Post-transcriptional 3´-UTR cleavage of mRNA transcripts generates thousands of stable uncapped autonomous RNA fragments
by: Yuval Malka, et al.
Published: (2017-12-01)

5' UTR regulatory elements and miRNA-mediated gene regulation
by: Ching-Ping Lin, et al.
Published: (2014)

Role of RNA G-quadruplexes within 5' UTRs in translation regulation
by: Kumari, Sunita
Published: (2008)

Co-Transcriptional Folding and Regulation Mechanisms of Riboswitches
by: Sha Gong, et al.
Published: (2017-07-01)

Regulation of Translational Efficiency by Disparate 5′-UTRs of PPARγ Splice Variants
by: Shawn McClelland, et al.
Published: (2009-01-01)

Calculation of the free energy and cooperativity of protein folding.
by: Alex Kentsis, et al.
Published: (2007-05-01)

A MITE insertion into the 3′-UTR regulates the transcription of TaHSP16.9 in common wheat
by: Jingting Li, et al.
Published: (2014-12-01)

ExUTR: a novel pipeline for large-scale prediction of 3′-UTR sequences from NGS data
by: Zixia Huang, et al.
Published: (2017-11-01)

Strategy of transcription regulation in the budding yeast.
by: Sagi Levy, et al.
Published: (2007-01-01)

Effect of 5'-UTR mutations on HCV replication
by: Mercuri, Luca
Published: (2013)

Mammalian gene regulation through the 3' UTR
by: Nielsen, Cydney Brooke
Published: (2008)

Systematic Identification of Regulatory Elements in Conserved 3′ UTRs of Human Transcripts
by: Panos Oikonomou, et al.
Published: (2014-04-01)

Alternative transcripts and 3'UTR elements govern the incorporation of selenocysteine into selenoprotein S.
by: Jodi L Bubenik, et al.
Published: (2013-01-01)

Regulation of translation in haloarchaea: 5'- and 3'-UTRs are essential and have to functionally interact in vivo.
by: Mariam Brenneis, et al.
Published: (2009-01-01)

Regulation of T-bet Translation in the YT Cell Line by Secondary Structures of the 5’ and 3’UTR
by: I-An Lai, et al.
Published: (2009)

Self-folding origami at any energy scale
by: Matthew B. Pinson, et al.
Published: (2017-05-01)

Post-transcriptional mechanisms contributing to RNA and protein localization: study of local translation and alternative 3′UTRs in induced neurons
by: Ciolli Mattioli, Camilla
Published: (2019)

Cross-species mapping of bidirectional promoters enables prediction of unannotated 5' UTRs and identification of species-specific transcripts
by: Lewin Harris A, et al.
Published: (2009-04-01)

Genome-scale determination of 5´ and 3´ boundaries of RNA transcripts in Streptomyces genomes
by: Yongjae Lee, et al.
Published: (2020-12-01)

Cannot write session to /tmp/vufind_sessions/sess_brtk8t2pn4r4r2lfg7hnf0js5c