MS4A2-rs573790 Is Associated With Aspirin-Exacerbated Respiratory Disease: Replicative Study Using a Candidate Gene Strategy

Aspirin exacerbated respiratory disease (AERD) is a set of diseases of the unified airway, and its physiopathology is related to disruption of the metabolism of arachidonic acid (AA). Genetic association studies in AERD had explored single nucleotide polymorphism (SNPs) in several genes related to m...

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Main Authors: Gandhi F. Pavón-Romero, Gloria Pérez-Rubio, Fernando Ramírez-Jiménez, Enrique Ambrocio-Ortiz, Elisé Bañuelos-Ortiz, Norma Alvarado-Franco, Karen E. Xochipa-Ruiz, Elizabeth Hernández-Juárez, Beatriz A. Flores-García, Ángel E. Camarena, Luis M. Terán, Ramcés Falfán-Valencia
Format: Article
Language:English
Published: Frontiers Media S.A. 2018-09-01
Series:Frontiers in Genetics
Subjects:
SNP
Online Access:https://www.frontiersin.org/article/10.3389/fgene.2018.00363/full
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spelling doaj-0ef46e385c834311822b1e22e1f602c82020-11-24T20:58:32ZengFrontiers Media S.A.Frontiers in Genetics1664-80212018-09-01910.3389/fgene.2018.00363399372MS4A2-rs573790 Is Associated With Aspirin-Exacerbated Respiratory Disease: Replicative Study Using a Candidate Gene StrategyGandhi F. Pavón-Romero0Gloria Pérez-Rubio1Fernando Ramírez-Jiménez2Enrique Ambrocio-Ortiz3Elisé Bañuelos-Ortiz4Norma Alvarado-Franco5Karen E. Xochipa-Ruiz6Elizabeth Hernández-Juárez7Beatriz A. Flores-García8Ángel E. Camarena9Luis M. Terán10Luis M. Terán11Ramcés Falfán-Valencia12Department of Immunogenetics and Allergy, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoHLA Laboratory, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoDepartment of Immunogenetics and Allergy, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoHLA Laboratory, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoDepartment of Immunogenetics and Allergy, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoDepartment of Immunogenetics and Allergy, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoDepartment of Immunogenetics and Allergy, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoDepartment of Immunogenetics and Allergy, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoDepartment of Immunogenetics and Allergy, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoHLA Laboratory, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoDepartment of Immunogenetics and Allergy, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoBiomedicine in the Post-Genomic Era, Mexico City, MexicoHLA Laboratory, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, MexicoAspirin exacerbated respiratory disease (AERD) is a set of diseases of the unified airway, and its physiopathology is related to disruption of the metabolism of arachidonic acid (AA). Genetic association studies in AERD had explored single nucleotide polymorphism (SNPs) in several genes related to many mechanisms (AA metabolism, inflammation, drug metabolism, etc.) but most lack validation stages in second populations. Our aim is to evaluated whether contribution to susceptibility of SNPs reported in other populations are associated with AERD in Mexican Mestizo patients. We developed a replicative study in two stages. In the first, 381 SNPs selected by fine mapping of associated genes, (previously reported in the literature), were integrated into a microarray and tested in three groups (AERD, asthma and healthy controls -HC-) using the GoldenGate array. Results associated to risk based on genetic models [comparing: AERD vs. HC (comparison 1, C1), AERD vs. asthma (C2), and asthma vs. HC (C3)] were validated in the second stage in other population groups using qPCR. In the first stage, we identified 11 SNPs associated with risk in C1.The top SNPs were ACE-rs4309C (p = 0.0001) and MS4A2-rs573790C (p = 0.0002). In C2, we detected 14 SNPs, including ACE-rs4309C (p = 0.0001). In C3, we found MS4A2-rs573790C (p = 0.001). Using genetic models, C1 MS4A2-rs57370 CC (p = 0.001), and ACE-rs4309 CC (p = 0.002) had associations. In C2 ACE-rs4309 CC (p = 0.0001) and C3 MS4A2-rs573790 CC (p = 0.001) were also associate with risk. In the second stage, only MS4A2-rs573790 CC had significance in C1 and C3 (p = 0.008 and p = 0.03). We concluded that rs573790 in the MS4A2 gene is the only SNP that supports an association with AERD in Mexican Mestizo patients in both stages of the study.https://www.frontiersin.org/article/10.3389/fgene.2018.00363/fullAERDMS4A2genetic associationSNPreplicative studyaspirin intolerant asthma
collection DOAJ
language English
format Article
sources DOAJ
author Gandhi F. Pavón-Romero
Gloria Pérez-Rubio
Fernando Ramírez-Jiménez
Enrique Ambrocio-Ortiz
Elisé Bañuelos-Ortiz
Norma Alvarado-Franco
Karen E. Xochipa-Ruiz
Elizabeth Hernández-Juárez
Beatriz A. Flores-García
Ángel E. Camarena
Luis M. Terán
Luis M. Terán
Ramcés Falfán-Valencia
spellingShingle Gandhi F. Pavón-Romero
Gloria Pérez-Rubio
Fernando Ramírez-Jiménez
Enrique Ambrocio-Ortiz
Elisé Bañuelos-Ortiz
Norma Alvarado-Franco
Karen E. Xochipa-Ruiz
Elizabeth Hernández-Juárez
Beatriz A. Flores-García
Ángel E. Camarena
Luis M. Terán
Luis M. Terán
Ramcés Falfán-Valencia
MS4A2-rs573790 Is Associated With Aspirin-Exacerbated Respiratory Disease: Replicative Study Using a Candidate Gene Strategy
Frontiers in Genetics
AERD
MS4A2
genetic association
SNP
replicative study
aspirin intolerant asthma
author_facet Gandhi F. Pavón-Romero
Gloria Pérez-Rubio
Fernando Ramírez-Jiménez
Enrique Ambrocio-Ortiz
Elisé Bañuelos-Ortiz
Norma Alvarado-Franco
Karen E. Xochipa-Ruiz
Elizabeth Hernández-Juárez
Beatriz A. Flores-García
Ángel E. Camarena
Luis M. Terán
Luis M. Terán
Ramcés Falfán-Valencia
author_sort Gandhi F. Pavón-Romero
title MS4A2-rs573790 Is Associated With Aspirin-Exacerbated Respiratory Disease: Replicative Study Using a Candidate Gene Strategy
title_short MS4A2-rs573790 Is Associated With Aspirin-Exacerbated Respiratory Disease: Replicative Study Using a Candidate Gene Strategy
title_full MS4A2-rs573790 Is Associated With Aspirin-Exacerbated Respiratory Disease: Replicative Study Using a Candidate Gene Strategy
title_fullStr MS4A2-rs573790 Is Associated With Aspirin-Exacerbated Respiratory Disease: Replicative Study Using a Candidate Gene Strategy
title_full_unstemmed MS4A2-rs573790 Is Associated With Aspirin-Exacerbated Respiratory Disease: Replicative Study Using a Candidate Gene Strategy
title_sort ms4a2-rs573790 is associated with aspirin-exacerbated respiratory disease: replicative study using a candidate gene strategy
publisher Frontiers Media S.A.
series Frontiers in Genetics
issn 1664-8021
publishDate 2018-09-01
description Aspirin exacerbated respiratory disease (AERD) is a set of diseases of the unified airway, and its physiopathology is related to disruption of the metabolism of arachidonic acid (AA). Genetic association studies in AERD had explored single nucleotide polymorphism (SNPs) in several genes related to many mechanisms (AA metabolism, inflammation, drug metabolism, etc.) but most lack validation stages in second populations. Our aim is to evaluated whether contribution to susceptibility of SNPs reported in other populations are associated with AERD in Mexican Mestizo patients. We developed a replicative study in two stages. In the first, 381 SNPs selected by fine mapping of associated genes, (previously reported in the literature), were integrated into a microarray and tested in three groups (AERD, asthma and healthy controls -HC-) using the GoldenGate array. Results associated to risk based on genetic models [comparing: AERD vs. HC (comparison 1, C1), AERD vs. asthma (C2), and asthma vs. HC (C3)] were validated in the second stage in other population groups using qPCR. In the first stage, we identified 11 SNPs associated with risk in C1.The top SNPs were ACE-rs4309C (p = 0.0001) and MS4A2-rs573790C (p = 0.0002). In C2, we detected 14 SNPs, including ACE-rs4309C (p = 0.0001). In C3, we found MS4A2-rs573790C (p = 0.001). Using genetic models, C1 MS4A2-rs57370 CC (p = 0.001), and ACE-rs4309 CC (p = 0.002) had associations. In C2 ACE-rs4309 CC (p = 0.0001) and C3 MS4A2-rs573790 CC (p = 0.001) were also associate with risk. In the second stage, only MS4A2-rs573790 CC had significance in C1 and C3 (p = 0.008 and p = 0.03). We concluded that rs573790 in the MS4A2 gene is the only SNP that supports an association with AERD in Mexican Mestizo patients in both stages of the study.
topic AERD
MS4A2
genetic association
SNP
replicative study
aspirin intolerant asthma
url https://www.frontiersin.org/article/10.3389/fgene.2018.00363/full
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