From theory to experimental design-Quantifying a trait-based theory of predator-prey dynamics.

Successfully applying theoretical models to natural communities and predicting ecosystem behavior under changing conditions is the backbone of predictive ecology. However, the experiments required to test these models are dictated by practical constraints, and models are often opportunistically vali...

Full description

Bibliographic Details
Main Authors: A N Laubmeier, Kate Wootton, J E Banks, Riccardo Bommarco, Alva Curtsdotter, Tomas Jonsson, Tomas Roslin, H T Banks
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2018-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC5918917?pdf=render
id doaj-0c0bcc54d0e2476db67ee3dc0367d1dc
record_format Article
spelling doaj-0c0bcc54d0e2476db67ee3dc0367d1dc2020-11-25T01:37:00ZengPublic Library of Science (PLoS)PLoS ONE1932-62032018-01-01134e019591910.1371/journal.pone.0195919From theory to experimental design-Quantifying a trait-based theory of predator-prey dynamics.A N LaubmeierKate WoottonJ E BanksRiccardo BommarcoAlva CurtsdotterTomas JonssonTomas RoslinH T BanksSuccessfully applying theoretical models to natural communities and predicting ecosystem behavior under changing conditions is the backbone of predictive ecology. However, the experiments required to test these models are dictated by practical constraints, and models are often opportunistically validated against data for which they were never intended. Alternatively, we can inform and improve experimental design by an in-depth pre-experimental analysis of the model, generating experiments better targeted at testing the validity of a theory. Here, we describe this process for a specific experiment. Starting from food web ecological theory, we formulate a model and design an experiment to optimally test the validity of the theory, supplementing traditional design considerations with model analysis. The experiment itself will be run and described in a separate paper. The theory we test is that trophic population dynamics are dictated by species traits, and we study this in a community of terrestrial arthropods. We depart from the Allometric Trophic Network (ATN) model and hypothesize that including habitat use, in addition to body mass, is necessary to better model trophic interactions. We therefore formulate new terms which account for micro-habitat use as well as intra- and interspecific interference in the ATN model. We design an experiment and an effective sampling regime to test this model and the underlying assumptions about the traits dominating trophic interactions. We arrive at a detailed sampling protocol to maximize information content in the empirical data obtained from the experiment and, relying on theoretical analysis of the proposed model, explore potential shortcomings of our design. Consequently, since this is a "pre-experimental" exercise aimed at improving the links between hypothesis formulation, model construction, experimental design and data collection, we hasten to publish our findings before analyzing data from the actual experiment, thus setting the stage for strong inference.http://europepmc.org/articles/PMC5918917?pdf=render
collection DOAJ
language English
format Article
sources DOAJ
author A N Laubmeier
Kate Wootton
J E Banks
Riccardo Bommarco
Alva Curtsdotter
Tomas Jonsson
Tomas Roslin
H T Banks
spellingShingle A N Laubmeier
Kate Wootton
J E Banks
Riccardo Bommarco
Alva Curtsdotter
Tomas Jonsson
Tomas Roslin
H T Banks
From theory to experimental design-Quantifying a trait-based theory of predator-prey dynamics.
PLoS ONE
author_facet A N Laubmeier
Kate Wootton
J E Banks
Riccardo Bommarco
Alva Curtsdotter
Tomas Jonsson
Tomas Roslin
H T Banks
author_sort A N Laubmeier
title From theory to experimental design-Quantifying a trait-based theory of predator-prey dynamics.
title_short From theory to experimental design-Quantifying a trait-based theory of predator-prey dynamics.
title_full From theory to experimental design-Quantifying a trait-based theory of predator-prey dynamics.
title_fullStr From theory to experimental design-Quantifying a trait-based theory of predator-prey dynamics.
title_full_unstemmed From theory to experimental design-Quantifying a trait-based theory of predator-prey dynamics.
title_sort from theory to experimental design-quantifying a trait-based theory of predator-prey dynamics.
publisher Public Library of Science (PLoS)
series PLoS ONE
issn 1932-6203
publishDate 2018-01-01
description Successfully applying theoretical models to natural communities and predicting ecosystem behavior under changing conditions is the backbone of predictive ecology. However, the experiments required to test these models are dictated by practical constraints, and models are often opportunistically validated against data for which they were never intended. Alternatively, we can inform and improve experimental design by an in-depth pre-experimental analysis of the model, generating experiments better targeted at testing the validity of a theory. Here, we describe this process for a specific experiment. Starting from food web ecological theory, we formulate a model and design an experiment to optimally test the validity of the theory, supplementing traditional design considerations with model analysis. The experiment itself will be run and described in a separate paper. The theory we test is that trophic population dynamics are dictated by species traits, and we study this in a community of terrestrial arthropods. We depart from the Allometric Trophic Network (ATN) model and hypothesize that including habitat use, in addition to body mass, is necessary to better model trophic interactions. We therefore formulate new terms which account for micro-habitat use as well as intra- and interspecific interference in the ATN model. We design an experiment and an effective sampling regime to test this model and the underlying assumptions about the traits dominating trophic interactions. We arrive at a detailed sampling protocol to maximize information content in the empirical data obtained from the experiment and, relying on theoretical analysis of the proposed model, explore potential shortcomings of our design. Consequently, since this is a "pre-experimental" exercise aimed at improving the links between hypothesis formulation, model construction, experimental design and data collection, we hasten to publish our findings before analyzing data from the actual experiment, thus setting the stage for strong inference.
url http://europepmc.org/articles/PMC5918917?pdf=render
work_keys_str_mv AT anlaubmeier fromtheorytoexperimentaldesignquantifyingatraitbasedtheoryofpredatorpreydynamics
AT katewootton fromtheorytoexperimentaldesignquantifyingatraitbasedtheoryofpredatorpreydynamics
AT jebanks fromtheorytoexperimentaldesignquantifyingatraitbasedtheoryofpredatorpreydynamics
AT riccardobommarco fromtheorytoexperimentaldesignquantifyingatraitbasedtheoryofpredatorpreydynamics
AT alvacurtsdotter fromtheorytoexperimentaldesignquantifyingatraitbasedtheoryofpredatorpreydynamics
AT tomasjonsson fromtheorytoexperimentaldesignquantifyingatraitbasedtheoryofpredatorpreydynamics
AT tomasroslin fromtheorytoexperimentaldesignquantifyingatraitbasedtheoryofpredatorpreydynamics
AT htbanks fromtheorytoexperimentaldesignquantifyingatraitbasedtheoryofpredatorpreydynamics
_version_ 1725060303441362944