A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord

The Drosophila ventral nerve cord (VNC) receives and processes descending signals from the brain to produce a variety of coordinated locomotor outputs. It also integrates sensory information from the periphery and sends ascending signals to the brain. We used single-cell transcriptomics to generate...

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Main Authors: Aaron M Allen, Megan C Neville, Sebastian Birtles, Vincent Croset, Christoph Daniel Treiber, Scott Waddell, Stephen F Goodwin
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2020-04-01
Series:eLife
Subjects:
Online Access:https://elifesciences.org/articles/54074
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spelling doaj-0a813d6dc3d043a2bab4e06b5e733aa92021-05-05T21:01:15ZengeLife Sciences Publications LtdeLife2050-084X2020-04-01910.7554/eLife.54074A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cordAaron M Allen0https://orcid.org/0000-0002-7961-4392Megan C Neville1https://orcid.org/0000-0001-8506-9944Sebastian Birtles2https://orcid.org/0000-0003-4617-4092Vincent Croset3Christoph Daniel Treiber4https://orcid.org/0000-0002-6994-091XScott Waddell5https://orcid.org/0000-0003-4503-6229Stephen F Goodwin6https://orcid.org/0000-0002-0552-4140Centre for Neural Circuits and Behaviour, University of Oxford, Oxford, United KingdomCentre for Neural Circuits and Behaviour, University of Oxford, Oxford, United KingdomCentre for Neural Circuits and Behaviour, University of Oxford, Oxford, United KingdomCentre for Neural Circuits and Behaviour, University of Oxford, Oxford, United KingdomCentre for Neural Circuits and Behaviour, University of Oxford, Oxford, United KingdomCentre for Neural Circuits and Behaviour, University of Oxford, Oxford, United KingdomCentre for Neural Circuits and Behaviour, University of Oxford, Oxford, United KingdomThe Drosophila ventral nerve cord (VNC) receives and processes descending signals from the brain to produce a variety of coordinated locomotor outputs. It also integrates sensory information from the periphery and sends ascending signals to the brain. We used single-cell transcriptomics to generate an unbiased classification of cellular diversity in the VNC of five-day old adult flies. We produced an atlas of 26,000 high-quality cells, representing more than 100 transcriptionally distinct cell types. The predominant gene signatures defining neuronal cell types reflect shared developmental histories based on the neuroblast from which cells were derived, as well as their birth order. The relative position of cells along the anterior-posterior axis could also be assigned using adult Hox gene expression. This single-cell transcriptional atlas of the adult fly VNC will be a valuable resource for future studies of neurodevelopment and behavior.https://elifesciences.org/articles/54074single-cell transcriptomicsnervous systemventral nerve cord
collection DOAJ
language English
format Article
sources DOAJ
author Aaron M Allen
Megan C Neville
Sebastian Birtles
Vincent Croset
Christoph Daniel Treiber
Scott Waddell
Stephen F Goodwin
spellingShingle Aaron M Allen
Megan C Neville
Sebastian Birtles
Vincent Croset
Christoph Daniel Treiber
Scott Waddell
Stephen F Goodwin
A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord
eLife
single-cell transcriptomics
nervous system
ventral nerve cord
author_facet Aaron M Allen
Megan C Neville
Sebastian Birtles
Vincent Croset
Christoph Daniel Treiber
Scott Waddell
Stephen F Goodwin
author_sort Aaron M Allen
title A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord
title_short A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord
title_full A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord
title_fullStr A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord
title_full_unstemmed A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord
title_sort single-cell transcriptomic atlas of the adult drosophila ventral nerve cord
publisher eLife Sciences Publications Ltd
series eLife
issn 2050-084X
publishDate 2020-04-01
description The Drosophila ventral nerve cord (VNC) receives and processes descending signals from the brain to produce a variety of coordinated locomotor outputs. It also integrates sensory information from the periphery and sends ascending signals to the brain. We used single-cell transcriptomics to generate an unbiased classification of cellular diversity in the VNC of five-day old adult flies. We produced an atlas of 26,000 high-quality cells, representing more than 100 transcriptionally distinct cell types. The predominant gene signatures defining neuronal cell types reflect shared developmental histories based on the neuroblast from which cells were derived, as well as their birth order. The relative position of cells along the anterior-posterior axis could also be assigned using adult Hox gene expression. This single-cell transcriptional atlas of the adult fly VNC will be a valuable resource for future studies of neurodevelopment and behavior.
topic single-cell transcriptomics
nervous system
ventral nerve cord
url https://elifesciences.org/articles/54074
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