Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)
Peripheral nerves are organ-like structures containing diverse cell types to optimize function. This interactive assembly includes mostly axon-associated Schwann cells, but also endothelial cells of supporting blood vessels, immune system-associated cells, barrier-forming cells of the perineurium su...
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doaj-0a0331ff455e4b589c7e42dea7d70f952021-05-05T22:59:49ZengeLife Sciences Publications LtdeLife2050-084X2021-04-011010.7554/eLife.58591Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)Daniel Gerber0https://orcid.org/0000-0001-6613-654XJorge A Pereira1https://orcid.org/0000-0002-0159-4133Joanne Gerber2Ge Tan3https://orcid.org/0000-0003-0026-8739Slavica Dimitrieva4Emilio Yángüez5Ueli Suter6https://orcid.org/0000-0002-9211-5184Department of Biology, Institute of Molecular Health Sciences, Swiss Federal Institute of Technology, ETH Zurich, Zurich, SwitzerlandDepartment of Biology, Institute of Molecular Health Sciences, Swiss Federal Institute of Technology, ETH Zurich, Zurich, SwitzerlandDepartment of Biology, Institute of Molecular Health Sciences, Swiss Federal Institute of Technology, ETH Zurich, Zurich, SwitzerlandFunctional Genomics Center Zurich, ETH Zurich/University of Zurich, Zurich, SwitzerlandFunctional Genomics Center Zurich, ETH Zurich/University of Zurich, Zurich, SwitzerlandFunctional Genomics Center Zurich, ETH Zurich/University of Zurich, Zurich, SwitzerlandDepartment of Biology, Institute of Molecular Health Sciences, Swiss Federal Institute of Technology, ETH Zurich, Zurich, SwitzerlandPeripheral nerves are organ-like structures containing diverse cell types to optimize function. This interactive assembly includes mostly axon-associated Schwann cells, but also endothelial cells of supporting blood vessels, immune system-associated cells, barrier-forming cells of the perineurium surrounding and protecting nerve fascicles, and connective tissue-resident cells within the intra-fascicular endoneurium and inter-fascicular epineurium. We have established transcriptional profiles of mouse sciatic nerve-inhabitant cells to foster the fundamental understanding of peripheral nerves. To achieve this goal, we have combined bulk RNA sequencing of developing sciatic nerves up to the adult with focused bulk and single-cell RNA sequencing of Schwann cells throughout postnatal development, extended by single-cell transcriptome analysis of the full sciatic nerve both perinatally and in the adult. The results were merged in the transcriptome resource Sciatic Nerve ATlas (SNAT: https://www.snat.ethz.ch). We anticipate that insights gained from our multi-layered analysis will serve as valuable interactive reference point to guide future studies.https://elifesciences.org/articles/58591Schwann cellsmyelinationnervesperipheral nervous system |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Daniel Gerber Jorge A Pereira Joanne Gerber Ge Tan Slavica Dimitrieva Emilio Yángüez Ueli Suter |
spellingShingle |
Daniel Gerber Jorge A Pereira Joanne Gerber Ge Tan Slavica Dimitrieva Emilio Yángüez Ueli Suter Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT) eLife Schwann cells myelination nerves peripheral nervous system |
author_facet |
Daniel Gerber Jorge A Pereira Joanne Gerber Ge Tan Slavica Dimitrieva Emilio Yángüez Ueli Suter |
author_sort |
Daniel Gerber |
title |
Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT) |
title_short |
Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT) |
title_full |
Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT) |
title_fullStr |
Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT) |
title_full_unstemmed |
Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT) |
title_sort |
transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve atlas (snat) |
publisher |
eLife Sciences Publications Ltd |
series |
eLife |
issn |
2050-084X |
publishDate |
2021-04-01 |
description |
Peripheral nerves are organ-like structures containing diverse cell types to optimize function. This interactive assembly includes mostly axon-associated Schwann cells, but also endothelial cells of supporting blood vessels, immune system-associated cells, barrier-forming cells of the perineurium surrounding and protecting nerve fascicles, and connective tissue-resident cells within the intra-fascicular endoneurium and inter-fascicular epineurium. We have established transcriptional profiles of mouse sciatic nerve-inhabitant cells to foster the fundamental understanding of peripheral nerves. To achieve this goal, we have combined bulk RNA sequencing of developing sciatic nerves up to the adult with focused bulk and single-cell RNA sequencing of Schwann cells throughout postnatal development, extended by single-cell transcriptome analysis of the full sciatic nerve both perinatally and in the adult. The results were merged in the transcriptome resource Sciatic Nerve ATlas (SNAT: https://www.snat.ethz.ch). We anticipate that insights gained from our multi-layered analysis will serve as valuable interactive reference point to guide future studies. |
topic |
Schwann cells myelination nerves peripheral nervous system |
url |
https://elifesciences.org/articles/58591 |
work_keys_str_mv |
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