Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)

Peripheral nerves are organ-like structures containing diverse cell types to optimize function. This interactive assembly includes mostly axon-associated Schwann cells, but also endothelial cells of supporting blood vessels, immune system-associated cells, barrier-forming cells of the perineurium su...

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Main Authors: Daniel Gerber, Jorge A Pereira, Joanne Gerber, Ge Tan, Slavica Dimitrieva, Emilio Yángüez, Ueli Suter
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2021-04-01
Series:eLife
Subjects:
Online Access:https://elifesciences.org/articles/58591
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spelling doaj-0a0331ff455e4b589c7e42dea7d70f952021-05-05T22:59:49ZengeLife Sciences Publications LtdeLife2050-084X2021-04-011010.7554/eLife.58591Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)Daniel Gerber0https://orcid.org/0000-0001-6613-654XJorge A Pereira1https://orcid.org/0000-0002-0159-4133Joanne Gerber2Ge Tan3https://orcid.org/0000-0003-0026-8739Slavica Dimitrieva4Emilio Yángüez5Ueli Suter6https://orcid.org/0000-0002-9211-5184Department of Biology, Institute of Molecular Health Sciences, Swiss Federal Institute of Technology, ETH Zurich, Zurich, SwitzerlandDepartment of Biology, Institute of Molecular Health Sciences, Swiss Federal Institute of Technology, ETH Zurich, Zurich, SwitzerlandDepartment of Biology, Institute of Molecular Health Sciences, Swiss Federal Institute of Technology, ETH Zurich, Zurich, SwitzerlandFunctional Genomics Center Zurich, ETH Zurich/University of Zurich, Zurich, SwitzerlandFunctional Genomics Center Zurich, ETH Zurich/University of Zurich, Zurich, SwitzerlandFunctional Genomics Center Zurich, ETH Zurich/University of Zurich, Zurich, SwitzerlandDepartment of Biology, Institute of Molecular Health Sciences, Swiss Federal Institute of Technology, ETH Zurich, Zurich, SwitzerlandPeripheral nerves are organ-like structures containing diverse cell types to optimize function. This interactive assembly includes mostly axon-associated Schwann cells, but also endothelial cells of supporting blood vessels, immune system-associated cells, barrier-forming cells of the perineurium surrounding and protecting nerve fascicles, and connective tissue-resident cells within the intra-fascicular endoneurium and inter-fascicular epineurium. We have established transcriptional profiles of mouse sciatic nerve-inhabitant cells to foster the fundamental understanding of peripheral nerves. To achieve this goal, we have combined bulk RNA sequencing of developing sciatic nerves up to the adult with focused bulk and single-cell RNA sequencing of Schwann cells throughout postnatal development, extended by single-cell transcriptome analysis of the full sciatic nerve both perinatally and in the adult. The results were merged in the transcriptome resource Sciatic Nerve ATlas (SNAT: https://www.snat.ethz.ch). We anticipate that insights gained from our multi-layered analysis will serve as valuable interactive reference point to guide future studies.https://elifesciences.org/articles/58591Schwann cellsmyelinationnervesperipheral nervous system
collection DOAJ
language English
format Article
sources DOAJ
author Daniel Gerber
Jorge A Pereira
Joanne Gerber
Ge Tan
Slavica Dimitrieva
Emilio Yángüez
Ueli Suter
spellingShingle Daniel Gerber
Jorge A Pereira
Joanne Gerber
Ge Tan
Slavica Dimitrieva
Emilio Yángüez
Ueli Suter
Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)
eLife
Schwann cells
myelination
nerves
peripheral nervous system
author_facet Daniel Gerber
Jorge A Pereira
Joanne Gerber
Ge Tan
Slavica Dimitrieva
Emilio Yángüez
Ueli Suter
author_sort Daniel Gerber
title Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)
title_short Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)
title_full Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)
title_fullStr Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)
title_full_unstemmed Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)
title_sort transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve atlas (snat)
publisher eLife Sciences Publications Ltd
series eLife
issn 2050-084X
publishDate 2021-04-01
description Peripheral nerves are organ-like structures containing diverse cell types to optimize function. This interactive assembly includes mostly axon-associated Schwann cells, but also endothelial cells of supporting blood vessels, immune system-associated cells, barrier-forming cells of the perineurium surrounding and protecting nerve fascicles, and connective tissue-resident cells within the intra-fascicular endoneurium and inter-fascicular epineurium. We have established transcriptional profiles of mouse sciatic nerve-inhabitant cells to foster the fundamental understanding of peripheral nerves. To achieve this goal, we have combined bulk RNA sequencing of developing sciatic nerves up to the adult with focused bulk and single-cell RNA sequencing of Schwann cells throughout postnatal development, extended by single-cell transcriptome analysis of the full sciatic nerve both perinatally and in the adult. The results were merged in the transcriptome resource Sciatic Nerve ATlas (SNAT: https://www.snat.ethz.ch). We anticipate that insights gained from our multi-layered analysis will serve as valuable interactive reference point to guide future studies.
topic Schwann cells
myelination
nerves
peripheral nervous system
url https://elifesciences.org/articles/58591
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