CNNcon: improved protein contact maps prediction using cascaded neural networks.

CNNcon: improved protein contact maps prediction using cascaded neural networks.

BACKGROUNDS: Despite continuing progress in X-ray crystallography and high-field NMR spectroscopy for determination of three-dimensional protein structures, the number of unsolved and newly discovered sequences grows much faster than that of determined structures. Protein modeling methods can possib...

Full description

Bibliographic Details
Main Authors:	Wang Ding, Jiang Xie, Dongbo Dai, Huiran Zhang, Hao Xie, Wu Zhang
Format:	Article
Language:	English
Published:	Public Library of Science (PLoS) 2013-01-01
Series:	PLoS ONE
Online Access:	http://europepmc.org/articles/PMC3634008?pdf=render

Similar Items

Parallel clustering algorithm for large-scale biological data sets.
by: Minchao Wang, et al.
Published: (2014-01-01)

Detection of Pin Defects in Aerial Images Based on Cascaded Convolutional Neural Network
by: Yewei Xiao, et al.
Published: (2021-01-01)

Predicting protein inter-residue contacts using composite likelihood maximization and deep learning
by: Haicang Zhang, et al.
Published: (2019-10-01)

Correction to: Predicting protein inter-residue contacts using composite likelihood maximization and deep learning
by: Haicang Zhang, et al.
Published: (2019-11-01)

Improving fragment-based ab initio protein structure assembly using low-accuracy contact-map predictions
by: S. M. Mortuza, et al.
Published: (2021-08-01)

DeepConPred2: An Improved Method for the Prediction of Protein Residue Contacts
by: Wenze Ding, et al.
Published: (2018-01-01)

Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
by: Wei Zheng, et al.
Published: (2019-10-01)

Prediction of Protein–Protein Interaction Sites Using Convolutional Neural Network and Improved Data Sets
by: Zengyan Xie, et al.
Published: (2020-01-01)

The evolution of logic circuits for the purpose of protein contact map prediction
by: Samuel D. Chapman, et al.
Published: (2017-04-01)

Multi-Regional Analysis of Contact Maps for Protein Structure Prediction
by: Ahmed, Hazem Radwan A.
Published: (2009)

Improved contact predictions using the recognition of protein like contact patterns.
by: Marcin J Skwark, et al.
Published: (2014-11-01)

Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model.
by: Sheng Wang, et al.
Published: (2017-01-01)

Multiplicative cascade processes and information integration for predictive mapping
by: Q. Cheng
Published: (2012-01-01)

Protein Contact Map Prediction Based on ResNet and DenseNet
by: Zhong Li, et al.
Published: (2020-01-01)

GANcon: Protein Contact Map Prediction With Deep Generative Adversarial Network
by: Hang Yang, et al.
Published: (2020-01-01)

A two-stage approach for improved prediction of residue contact maps
by: Pollastri Gianluca, et al.
Published: (2006-03-01)

Parallelizing Backpropagation Neural Network Using MapReduce and Cascading Model
by: Yang Liu, et al.
Published: (2016-01-01)

Applications of an Improved Aerodynamic Optimization Method on a Low Reynolds Number Cascade
by: Shuyi Zhang, et al.
Published: (2020-09-01)

Cascade2vec: Learning Dynamic Cascade Representation by Recurrent Graph Neural Networks
by: Zhenhua Huang, et al.
Published: (2019-01-01)

Image Encryption Algorithm Based on Tent Delay-Sine Cascade with Logistic Map
by: Guidong Zhang, et al.
Published: (2020-03-01)

Optimal contact map alignment of protein-protein interfaces
by: Pulim, Vinay, et al.
Published: (2012)

Tuberculosis household accompaniment to improve the contact management cascade: A prospective cohort study.
by: Courtney M Yuen, et al.
Published: (2019-01-01)

Simultaneous Face Detection and Pose Estimation Using Convolutional Neural Network Cascade
by: Hao Wu, et al.
Published: (2018-01-01)

DeepCDpred: Inter-residue distance and contact prediction for improved prediction of protein structure.
by: Shuangxi Ji, et al.
Published: (2019-01-01)

A Cascade Graph Convolutional Network for Predicting Protein–Ligand Binding Affinity
by: Huimin Shen, et al.
Published: (2021-04-01)

Face Alignment Algorithm Based on an Improved Cascaded Convolutional Neural Network
by: Xun Duan, et al.
Published: (2021-01-01)

An Improved Neural Network Cascade for Face Detection in Large Scene Surveillance
by: Chengbin Peng, et al.
Published: (2018-11-01)

The neural cascade of attentional control.
by: Janelle Weaver
Published: (2007-01-01)

Analysis of Road Traffic Network Cascade Failures with Coupled Map Lattice Method
by: Yanan Zhang, et al.
Published: (2015-01-01)

Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map
by: Jianwen Chen, et al.
Published: (2021-02-01)

Prediction of Cascading Failures in Spatial Networks.
by: Yang Shunkun, et al.
Published: (2016-01-01)

An Improved Algorithm for Discriminating Soil Freezing and Thawing Using AMSR-E and AMSR2 Soil Moisture Products
by: Huiran Gao, et al.
Published: (2018-10-01)

Protein Contact Prediction Based on Protein Sequences
by: Dong-Jian Lin, et al.
Published: (2011)

A Computational Approach to Predicting Distance Maps from Contact Maps
by: Kuo, Tony Chien-Yen
Published: (2012)

A Predictive Neural Network-Based Cascade Control for pH Reactors
by: Mujahed AlDhaifallah, et al.
Published: (2016-01-01)

Contact prediction is hardest for the most informative contacts, but improves with the incorporation of contact potentials.
by: Jack Holland, et al.
Published: (2018-01-01)

The whole is greater than its parts: ensembling improves protein contact prediction
by: Wendy M. Billings, et al.
Published: (2021-04-01)

A sparse autoencoder-based deep neural network for protein solvent accessibility and contact number prediction
by: Lei Deng, et al.
Published: (2017-12-01)

Improving Super-Resolution Mapping by Combining Multiple Realizations Obtained Using the Indicator-Geostatistics Based Method
by: Zhongkui Shi, et al.
Published: (2017-07-01)

Improvement of Contact Tracing with Citizen’s Distributed Risk Maps
by: Miguel Rebollo, et al.
Published: (2021-05-01)