Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species

<p>Abstract</p> <p>Background</p> <p>Quantum mechanical calculations were performed on a variety of uranium species representing U(VI), U(V), U(IV), U-carbonates, U-phosphates, U-oxalates, U-catecholates, U-phosphodiesters, U-phosphorylated N-acetyl-glucosamine (NAG), a...

Full description

Bibliographic Details
Main Authors: Jha Prashant, Halada Gary P, Kubicki James D, Phillips Brian L
Format: Article
Language:English
Published: BMC 2009-08-01
Series:Chemistry Central Journal
Online Access:http://journal.chemistrycentral.com/content/3/1/10
id doaj-05b7fc9a5b3c49b6965bea610c1e8334
record_format Article
spelling doaj-05b7fc9a5b3c49b6965bea610c1e83342021-08-02T11:05:45ZengBMCChemistry Central Journal1752-153X2009-08-01311010.1186/1752-153X-3-10Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular speciesJha PrashantHalada Gary PKubicki James DPhillips Brian L<p>Abstract</p> <p>Background</p> <p>Quantum mechanical calculations were performed on a variety of uranium species representing U(VI), U(V), U(IV), U-carbonates, U-phosphates, U-oxalates, U-catecholates, U-phosphodiesters, U-phosphorylated N-acetyl-glucosamine (NAG), and U-2-Keto-3-doxyoctanoate (KDO) with explicit solvation by H<sub>2</sub>O molecules. These models represent major U species in natural waters and complexes on bacterial surfaces. The model results are compared to observed EXAFS, IR, Raman and NMR spectra.</p> <p>Results</p> <p>Agreement between experiment and theory is acceptable in most cases, and the reasons for discrepancies are discussed. Calculated Gibbs free energies are used to constrain which configurations are most likely to be stable under circumneutral pH conditions. Reduction of U(VI) to U(IV) is examined for the U-carbonate and U-catechol complexes.</p> <p>Conclusion</p> <p>Results on the potential energy differences between U(V)- and U(IV)-carbonate complexes suggest that the cause of slower disproportionation in this system is electrostatic repulsion between UO<sub>2 </sub>[CO<sub>3</sub>]<sub>3</sub><sup>5- </sup>ions that must approach one another to form U(VI) and U(IV) rather than a change in thermodynamic stability. Calculations on U-catechol species are consistent with the observation that UO<sub>2</sub><sup>2+ </sup>can oxidize catechol and form quinone-like species. In addition, outer-sphere complexation is predicted to be the most stable for U-catechol interactions based on calculated energies and comparison to <sup>13</sup>C NMR spectra. Outer-sphere complexes (i.e., ion pairs bridged by water molecules) are predicted to be comparable in Gibbs free energy to inner-sphere complexes for a model carboxylic acid. Complexation of uranyl to phosphorus-containing groups in extracellular polymeric substances is predicted to favor phosphonate groups, such as that found in phosphorylated NAG, rather than phosphodiesters, such as those in nucleic acids.</p> http://journal.chemistrycentral.com/content/3/1/10
collection DOAJ
language English
format Article
sources DOAJ
author Jha Prashant
Halada Gary P
Kubicki James D
Phillips Brian L
spellingShingle Jha Prashant
Halada Gary P
Kubicki James D
Phillips Brian L
Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
Chemistry Central Journal
author_facet Jha Prashant
Halada Gary P
Kubicki James D
Phillips Brian L
author_sort Jha Prashant
title Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title_short Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title_full Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title_fullStr Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title_full_unstemmed Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title_sort quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
publisher BMC
series Chemistry Central Journal
issn 1752-153X
publishDate 2009-08-01
description <p>Abstract</p> <p>Background</p> <p>Quantum mechanical calculations were performed on a variety of uranium species representing U(VI), U(V), U(IV), U-carbonates, U-phosphates, U-oxalates, U-catecholates, U-phosphodiesters, U-phosphorylated N-acetyl-glucosamine (NAG), and U-2-Keto-3-doxyoctanoate (KDO) with explicit solvation by H<sub>2</sub>O molecules. These models represent major U species in natural waters and complexes on bacterial surfaces. The model results are compared to observed EXAFS, IR, Raman and NMR spectra.</p> <p>Results</p> <p>Agreement between experiment and theory is acceptable in most cases, and the reasons for discrepancies are discussed. Calculated Gibbs free energies are used to constrain which configurations are most likely to be stable under circumneutral pH conditions. Reduction of U(VI) to U(IV) is examined for the U-carbonate and U-catechol complexes.</p> <p>Conclusion</p> <p>Results on the potential energy differences between U(V)- and U(IV)-carbonate complexes suggest that the cause of slower disproportionation in this system is electrostatic repulsion between UO<sub>2 </sub>[CO<sub>3</sub>]<sub>3</sub><sup>5- </sup>ions that must approach one another to form U(VI) and U(IV) rather than a change in thermodynamic stability. Calculations on U-catechol species are consistent with the observation that UO<sub>2</sub><sup>2+ </sup>can oxidize catechol and form quinone-like species. In addition, outer-sphere complexation is predicted to be the most stable for U-catechol interactions based on calculated energies and comparison to <sup>13</sup>C NMR spectra. Outer-sphere complexes (i.e., ion pairs bridged by water molecules) are predicted to be comparable in Gibbs free energy to inner-sphere complexes for a model carboxylic acid. Complexation of uranyl to phosphorus-containing groups in extracellular polymeric substances is predicted to favor phosphonate groups, such as that found in phosphorylated NAG, rather than phosphodiesters, such as those in nucleic acids.</p>
url http://journal.chemistrycentral.com/content/3/1/10
work_keys_str_mv AT jhaprashant quantummechanicalcalculationofaqueuousuraniumcomplexescarbonatephosphateorganicandbiomolecularspecies
AT haladagaryp quantummechanicalcalculationofaqueuousuraniumcomplexescarbonatephosphateorganicandbiomolecularspecies
AT kubickijamesd quantummechanicalcalculationofaqueuousuraniumcomplexescarbonatephosphateorganicandbiomolecularspecies
AT phillipsbrianl quantummechanicalcalculationofaqueuousuraniumcomplexescarbonatephosphateorganicandbiomolecularspecies
_version_ 1721233532311830528