Increasing workflow development speed and reproducibility with Vectools [version 2; referees: 2 approved]

Increasing workflow development speed and reproducibility with Vectools [version 2; referees: 2 approved]

Despite advances in bioinformatics, custom scripts remain a source of difficulty, slowing workflow development and hampering reproducibility. Here, we introduce Vectools, a command-line tool-suite to reduce reliance on custom scripts and improve reproducibility by offering a wide range of common eas...

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Bibliographic Details
Main Authors: Tyler Weirick, Raphael Müller, Shizuka Uchida
Format: Article
Language:English
Published: F1000 Research Ltd 2018-10-01
Series:F1000Research
Online Access:https://f1000research.com/articles/7-1499/v2
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spelling doaj-04253289c30b4e70a8a34adb9375f42a2020-11-25T01:29:40ZengF1000 Research LtdF1000Research2046-14022018-10-01710.12688/f1000research.16301.218308Increasing workflow development speed and reproducibility with Vectools [version 2; referees: 2 approved]Tyler Weirick0Raphael Müller1Shizuka Uchida2Cardiovascular Innovation Institute, University of Louisville, Louisville, KY, 40202, USAInstitute of Cardiovascular Regeneration, Goethe University Frankfurt, Frankfurt am Main, Hessen, 60590, GermanyCardiovascular Innovation Institute, University of Louisville, Louisville, KY, 40202, USADespite advances in bioinformatics, custom scripts remain a source of difficulty, slowing workflow development and hampering reproducibility. Here, we introduce Vectools, a command-line tool-suite to reduce reliance on custom scripts and improve reproducibility by offering a wide range of common easy-to-use functions for table and vector manipulation. Vectools also offers a number of vector related functions to speed up workflow development, such as simple machine learning and common statistics functions.https://f1000research.com/articles/7-1499/v2
collection DOAJ
language English
format Article
sources DOAJ
author Tyler Weirick
Raphael Müller
Shizuka Uchida
spellingShingle Tyler Weirick
Raphael Müller
Shizuka Uchida
Increasing workflow development speed and reproducibility with Vectools [version 2; referees: 2 approved]
F1000Research
author_facet Tyler Weirick
Raphael Müller
Shizuka Uchida
author_sort Tyler Weirick
title Increasing workflow development speed and reproducibility with Vectools [version 2; referees: 2 approved]
title_short Increasing workflow development speed and reproducibility with Vectools [version 2; referees: 2 approved]
title_full Increasing workflow development speed and reproducibility with Vectools [version 2; referees: 2 approved]
title_fullStr Increasing workflow development speed and reproducibility with Vectools [version 2; referees: 2 approved]
title_full_unstemmed Increasing workflow development speed and reproducibility with Vectools [version 2; referees: 2 approved]
title_sort increasing workflow development speed and reproducibility with vectools [version 2; referees: 2 approved]
publisher F1000 Research Ltd
series F1000Research
issn 2046-1402
publishDate 2018-10-01
description Despite advances in bioinformatics, custom scripts remain a source of difficulty, slowing workflow development and hampering reproducibility. Here, we introduce Vectools, a command-line tool-suite to reduce reliance on custom scripts and improve reproducibility by offering a wide range of common easy-to-use functions for table and vector manipulation. Vectools also offers a number of vector related functions to speed up workflow development, such as simple machine learning and common statistics functions.
url https://f1000research.com/articles/7-1499/v2
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AT raphaelmuller increasingworkflowdevelopmentspeedandreproducibilitywithvectoolsversion2referees2approved
AT shizukauchida increasingworkflowdevelopmentspeedandreproducibilitywithvectoolsversion2referees2approved
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