Grain-size distribution unmixing using the R package EMMAgeo

<p>The analysis of grain-size distributions has a long tradition in Quaternary Science and disciplines studying Earth surface and subsurface deposits. The decomposition of multi-modal grain-size distributions into inherent subpopulations, commonly termed end-member modelling analysis (EMMA), i...

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Main Authors: E. Dietze, M. Dietze
Format: Article
Language:deu
Published: Copernicus Publications 2019-05-01
Series:Eiszeitalter und Gegenwart
Online Access:https://www.eg-quaternary-sci-j.net/68/29/2019/egqsj-68-29-2019.pdf
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spelling doaj-0403065b48eb4e59ade47dcc87bd05092020-11-25T01:34:20ZdeuCopernicus PublicationsEiszeitalter und Gegenwart0424-71162199-90902019-05-0168294610.5194/egqsj-68-29-2019Grain-size distribution unmixing using the R package EMMAgeoE. Dietze0E. Dietze1M. Dietze2Alfred Wegener Institute for Polar and Marine Research, Research Unit Potsdam, 14473 Potsdam, GermanyGFZ German Research Centre for Geosciences, Section 3.2 Organic Geochemistry, 14473 Potsdam, GermanyGFZ German Research Centre for Geosciences, Section 5.1 Geomorphology, 14473 Potsdam, Germany<p>The analysis of grain-size distributions has a long tradition in Quaternary Science and disciplines studying Earth surface and subsurface deposits. The decomposition of multi-modal grain-size distributions into inherent subpopulations, commonly termed end-member modelling analysis (EMMA), is increasingly recognised as a tool to infer the underlying sediment sources, transport and (post-)depositional processes. Most of the existing deterministic EMMA approaches are only able to deliver one out of many possible solutions, thereby shortcutting uncertainty in model parameters. Here, we provide user-friendly computational protocols that support deterministic as well as robust (i.e. explicitly accounting for incomplete knowledge about input parameters in a probabilistic approach) EMMA, in the free and open software framework of R.</p> <p>In addition, and going beyond previous validation tests, we compare the performance of available grain-size EMMA algorithms using four real-world sediment types, covering a wide range of grain-size distribution shapes (alluvial fan, dune, loess and floodplain deposits). These were randomly mixed in the lab to produce a synthetic data set. Across all algorithms, the original data set was modelled with mean <span class="inline-formula"><i>R</i><sup>2</sup></span> values of 0.868 to 0.995 and mean absolute deviation (MAD) values of 0.06&thinsp;%&thinsp;vol to 0.34&thinsp;%&thinsp;vol. The original grain-size distribution shapes were modelled as end-member loadings with mean <span class="inline-formula"><i>R</i><sup>2</sup></span> values of 0.89 to 0.99 and MAD of 0.04&thinsp;%&thinsp;vol to 0.17&thinsp;%&thinsp;vol. End-member scores reproduced the original mixing ratios in the synthetic data set with mean <span class="inline-formula"><i>R</i><sup>2</sup></span> values of 0.68 to 0.93 and MAD of 0.1&thinsp;%&thinsp;vol to 1.6&thinsp;%&thinsp;vol. Depending on the validation criteria, all models provided reliable estimates of the input data, and each of the models exhibits individual strengths and weaknesses. Only robust EMMA allowed uncertainties of the end-members to be objectively estimated and expert knowledge to be included in the end-member definition. Yet, end-member interpretation should carefully consider the geological and sedimentological meaningfulness in terms of sediment sources, transport and deposition as well as post-depositional alteration of grain sizes. EMMA might also be powerful in other geoscientific contexts where the goal is to unmix sources and processes from compositional data sets.</p>https://www.eg-quaternary-sci-j.net/68/29/2019/egqsj-68-29-2019.pdf
collection DOAJ
language deu
format Article
sources DOAJ
author E. Dietze
E. Dietze
M. Dietze
spellingShingle E. Dietze
E. Dietze
M. Dietze
Grain-size distribution unmixing using the R package EMMAgeo
Eiszeitalter und Gegenwart
author_facet E. Dietze
E. Dietze
M. Dietze
author_sort E. Dietze
title Grain-size distribution unmixing using the R package EMMAgeo
title_short Grain-size distribution unmixing using the R package EMMAgeo
title_full Grain-size distribution unmixing using the R package EMMAgeo
title_fullStr Grain-size distribution unmixing using the R package EMMAgeo
title_full_unstemmed Grain-size distribution unmixing using the R package EMMAgeo
title_sort grain-size distribution unmixing using the r package emmageo
publisher Copernicus Publications
series Eiszeitalter und Gegenwart
issn 0424-7116
2199-9090
publishDate 2019-05-01
description <p>The analysis of grain-size distributions has a long tradition in Quaternary Science and disciplines studying Earth surface and subsurface deposits. The decomposition of multi-modal grain-size distributions into inherent subpopulations, commonly termed end-member modelling analysis (EMMA), is increasingly recognised as a tool to infer the underlying sediment sources, transport and (post-)depositional processes. Most of the existing deterministic EMMA approaches are only able to deliver one out of many possible solutions, thereby shortcutting uncertainty in model parameters. Here, we provide user-friendly computational protocols that support deterministic as well as robust (i.e. explicitly accounting for incomplete knowledge about input parameters in a probabilistic approach) EMMA, in the free and open software framework of R.</p> <p>In addition, and going beyond previous validation tests, we compare the performance of available grain-size EMMA algorithms using four real-world sediment types, covering a wide range of grain-size distribution shapes (alluvial fan, dune, loess and floodplain deposits). These were randomly mixed in the lab to produce a synthetic data set. Across all algorithms, the original data set was modelled with mean <span class="inline-formula"><i>R</i><sup>2</sup></span> values of 0.868 to 0.995 and mean absolute deviation (MAD) values of 0.06&thinsp;%&thinsp;vol to 0.34&thinsp;%&thinsp;vol. The original grain-size distribution shapes were modelled as end-member loadings with mean <span class="inline-formula"><i>R</i><sup>2</sup></span> values of 0.89 to 0.99 and MAD of 0.04&thinsp;%&thinsp;vol to 0.17&thinsp;%&thinsp;vol. End-member scores reproduced the original mixing ratios in the synthetic data set with mean <span class="inline-formula"><i>R</i><sup>2</sup></span> values of 0.68 to 0.93 and MAD of 0.1&thinsp;%&thinsp;vol to 1.6&thinsp;%&thinsp;vol. Depending on the validation criteria, all models provided reliable estimates of the input data, and each of the models exhibits individual strengths and weaknesses. Only robust EMMA allowed uncertainties of the end-members to be objectively estimated and expert knowledge to be included in the end-member definition. Yet, end-member interpretation should carefully consider the geological and sedimentological meaningfulness in terms of sediment sources, transport and deposition as well as post-depositional alteration of grain sizes. EMMA might also be powerful in other geoscientific contexts where the goal is to unmix sources and processes from compositional data sets.</p>
url https://www.eg-quaternary-sci-j.net/68/29/2019/egqsj-68-29-2019.pdf
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