Visualising very large phylogenetic trees in three dimensional hyperbolic space

<p>Abstract</p> <p>Background</p> <p>Common existing phylogenetic tree visualisation tools are not able to display readable trees with more than a few thousand nodes. These existing methodologies are based in two dimensional space.</p> <p>Results</p> &...

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Bibliographic Details
Main Authors: Liberles David A, Hyun Young, Hughes Timothy
Format: Article
Language:English
Published: BMC 2004-04-01
Series:BMC Bioinformatics
Online Access:http://www.biomedcentral.com/1471-2105/5/48
Description
Summary:<p>Abstract</p> <p>Background</p> <p>Common existing phylogenetic tree visualisation tools are not able to display readable trees with more than a few thousand nodes. These existing methodologies are based in two dimensional space.</p> <p>Results</p> <p>We introduce the idea of visualising phylogenetic trees in three dimensional hyperbolic space with the Walrus graph visualisation tool and have developed a conversion tool that enables the conversion of standard phylogenetic tree formats to Walrus' format. With Walrus, it becomes possible to visualise and navigate phylogenetic trees with more than 100,000 nodes.</p> <p>Conclusion</p> <p>Walrus enables desktop visualisation of very large phylogenetic trees in 3 dimensional hyperbolic space. This application is potentially useful for visualisation of the tree of life and for functional genomics derivatives, like The Adaptive Evolution Database (TAED).</p>
ISSN:1471-2105