Rapid birth-death evolution and positive selection in detoxification-type glutathione S-transferases in mammals.

Glutathione S-Transferases (GSTs) are phase II detoxification enzymes that may have evolved in response to changes of environmental substrates. GST genes formed a multigene family and in mammals, there are six classes known as Alpha, Mu, Omega, Pi, Theta, and Zeta. Recent studies in phase I detoxifi...

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Main Authors: Hui Ming Tan, Wai Yee Low
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2018-01-01
Series:PLoS ONE
Online Access:https://doi.org/10.1371/journal.pone.0209336
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spelling doaj-02c2f22f06e340dc81c09f4e901bf7632021-03-03T21:00:28ZengPublic Library of Science (PLoS)PLoS ONE1932-62032018-01-011312e020933610.1371/journal.pone.0209336Rapid birth-death evolution and positive selection in detoxification-type glutathione S-transferases in mammals.Hui Ming TanWai Yee LowGlutathione S-Transferases (GSTs) are phase II detoxification enzymes that may have evolved in response to changes of environmental substrates. GST genes formed a multigene family and in mammals, there are six classes known as Alpha, Mu, Omega, Pi, Theta, and Zeta. Recent studies in phase I detoxification system specifically the cytochrome P450s provided a general explanation on why genes from a common origin such as those in a multigene family have both phylogenetically stable and unstable genes. Genes that participate in core functions of organisms such as development and physiology are stable whereas genes that play a role in detoxification are unstable and evolve in a process known as birth-death evolution, which is characterised by frequent gene gains and losses. The generality of the birth-death model at explaining the evolution of detoxification enzymes beyond the phase I enzyme has not been comprehensively explored. This work utilized 383 Gst genes and 300 pseudogenes across 22 mammalian species to study gene gains and losses. GSTs vary greatly in their phylogenetic stability despite their overall sequence similarity. Stable Gst genes from Omega and Zeta classes do not show fluctuation in gene numbers from human to opossum. These genes play a role in biosynthesis related functions. Unstable genes that include Alpha, Mu, Pi and Theta undergo frequent gene gain and loss in a process known as birth-death evolution. Gene members of these four classes are well known for their roles in detoxification. Our positive selection screen identified five positively selected sites in mouse GSTA3. Previous studies showed two of these sites (108H and 208E) were biochemically tested as important residues that conferred catalytic activity against the toxic aflatoxin B1-8,9-epoxide. The functional significance against aflatoxin of the remaining three positively selected sites warrant further investigation.https://doi.org/10.1371/journal.pone.0209336
collection DOAJ
language English
format Article
sources DOAJ
author Hui Ming Tan
Wai Yee Low
spellingShingle Hui Ming Tan
Wai Yee Low
Rapid birth-death evolution and positive selection in detoxification-type glutathione S-transferases in mammals.
PLoS ONE
author_facet Hui Ming Tan
Wai Yee Low
author_sort Hui Ming Tan
title Rapid birth-death evolution and positive selection in detoxification-type glutathione S-transferases in mammals.
title_short Rapid birth-death evolution and positive selection in detoxification-type glutathione S-transferases in mammals.
title_full Rapid birth-death evolution and positive selection in detoxification-type glutathione S-transferases in mammals.
title_fullStr Rapid birth-death evolution and positive selection in detoxification-type glutathione S-transferases in mammals.
title_full_unstemmed Rapid birth-death evolution and positive selection in detoxification-type glutathione S-transferases in mammals.
title_sort rapid birth-death evolution and positive selection in detoxification-type glutathione s-transferases in mammals.
publisher Public Library of Science (PLoS)
series PLoS ONE
issn 1932-6203
publishDate 2018-01-01
description Glutathione S-Transferases (GSTs) are phase II detoxification enzymes that may have evolved in response to changes of environmental substrates. GST genes formed a multigene family and in mammals, there are six classes known as Alpha, Mu, Omega, Pi, Theta, and Zeta. Recent studies in phase I detoxification system specifically the cytochrome P450s provided a general explanation on why genes from a common origin such as those in a multigene family have both phylogenetically stable and unstable genes. Genes that participate in core functions of organisms such as development and physiology are stable whereas genes that play a role in detoxification are unstable and evolve in a process known as birth-death evolution, which is characterised by frequent gene gains and losses. The generality of the birth-death model at explaining the evolution of detoxification enzymes beyond the phase I enzyme has not been comprehensively explored. This work utilized 383 Gst genes and 300 pseudogenes across 22 mammalian species to study gene gains and losses. GSTs vary greatly in their phylogenetic stability despite their overall sequence similarity. Stable Gst genes from Omega and Zeta classes do not show fluctuation in gene numbers from human to opossum. These genes play a role in biosynthesis related functions. Unstable genes that include Alpha, Mu, Pi and Theta undergo frequent gene gain and loss in a process known as birth-death evolution. Gene members of these four classes are well known for their roles in detoxification. Our positive selection screen identified five positively selected sites in mouse GSTA3. Previous studies showed two of these sites (108H and 208E) were biochemically tested as important residues that conferred catalytic activity against the toxic aflatoxin B1-8,9-epoxide. The functional significance against aflatoxin of the remaining three positively selected sites warrant further investigation.
url https://doi.org/10.1371/journal.pone.0209336
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