Transcriptome and Genome Analyses Applied to Aquaculture Research

• Format: eBook
• Language: English
• Published: Basel MDPI - Multidisciplinary Digital Publishing Institute 2022
• Subjects: Biology, life sciences; Fisheries & related industries; Research & information: general; Aeromonas hydrophila; antiviral; antiviral immunity; aquaculture; association analysis; association study; Atlantic salmon; B cells; B30.2 domain; brain; bulked segregant analysis; c-reactive protein; ceRNA; Chinese mitten crab; Chinese soft-shelled turtle; chronic inflammation; co-chaperon network; common carp; comparative transcriptome; conserved miRNA; Ctenopharyngodon idella; development; Dicentrarchus labrax; edible red sea urchin; enteromyxosis; environment; Eriocheir sinensis; estradiol; European seabass; fatty acid elongase; fatty acids; fish; gene expression; genome; genomic selection; genomics; gills; gilthead sea bream; glycolysis; grass carp reovirus; growth; heat shock protein; hemorrhagic sepsis; hepatic enzymes; hepatic transcript expression; hepatopancreas necrosis disease; hepatopancreatic flora; heterobeltiosis; heterosis; high-throughput sequencing; histological structure; histopathology; HPI-axis; hypo-metabolic state; hypoxia; immune markers; immune response; immune status; immunoglobulins; immunohistochemistry; infection; inflammation; intermuscular bone; joint effect; Lateolabrax maculatus; lipid metabolism; liver; liver transcriptome; lncRNAs; long non-coding RNAs; Loxechinus albus; lumpfish; malnutrition; Megalobrama amblycephala; meta-analysis; metabolic landmarks; metamorphosis; metatranscriptomics sequencing; microarray; microarray transcriptome; microRNAs; miRNAs; Misgurnus anguillicaudatus; molecular evolution; molecular immunopathogenesis; mRNAs; mucosal immunity; muscle; muscle transcriptome; n/a; neuroendocrine-immune interaction; nodavirus; non-coding RNAs; novel miRNA; nutrigenomics; omega-6/omega-3 ratio; opioid receptors; Oreochromis niloticus; osmoregulation; oxidative damage; Pelodiscus sinensis; Philasterides dicentrarchi; poly-unsaturated fatty acid; polyploid size dimorphism; protein folding; protein turnover; pseudo-female; rag1 mutants; red cusk-eel; reference transcriptome; RNA; RNA-seq; RNA-Seq; RT-qPCR; salinity; salinity-alkalinity adaptation; salmon; seawater adaptation; sequencing; sex differentiation; sex-related; sexual size dimorphism; short pentraxins; single cell transcriptomics; skin; small-RNA sequencing; smoltification; SNP; sox family genes; stress response; SVCV; swimming performance; T lymphocytes; teleost; thermal stress; transcript expression; transcription factors; transcriptome; transcriptomics; transgressive genes; transporters; transportome; tripartite motif proteins; turbot; viral infection; whole-transcriptome sequencing; zebrafish
• Online Access: Open Access: DOAB: description of the publication; Open Access: DOAB, download the publication

 Aquaculture is an important economic activity for food production all around the world that has experienced an exponential growth during the last few decades. However, several weaknesses and bottlenecks still need to be addressed in order to improve the aquaculture productive system. The recent fast development of the omics technologies has provided scientists with meaningful tools to elucidate the molecular basis of their research interests. This reprint compiles different works about the use of transcriptomics and genomics technologies in different aspects of the aquaculture research, such as immunity, stress response, development, sexual dimorphism, among others, in a variety of fish and shellfish, and even in turtles. Different transcriptome (mRNAs and non-coding RNAs (ncRNAs)), genome (Single Nucleotide Polymorphisms (SNPs)), and metatranscriptome analyses were conducted to unravel those different aspects of interest.