Evolution under fluctuating environments explains observed robustness in metabolic networks.

by Orkun S Soyer, Thomas Pfeiffer
Published 2010-08-01

Evolution of taxis responses in virtual bacteria: non-adaptive dynamics.

by Richard A Goldstein, Orkun S Soyer
Published 2008-05-01

The evolution of connectivity in metabolic networks.

by Thomas Pfeiffer, Orkun S Soyer, Sebastian Bonhoeffer
Published 2005-07-01

Split histidine kinases enable ultrasensitivity and bistability in two-component signaling networks.

by Munia Amin, Steven L Porter, Orkun S Soyer
Published 2013-01-01

Enzyme Sequestration as a Tuning Point in Controlling Response Dynamics of Signalling Networks.

by Song Feng, Julien F Ollivier, Orkun S Soyer
Published 2016-05-01

Ultrasensitive Negative Feedback Control: A Natural Approach for the Design of Synthetic Controllers.

by Francesco Montefusco, Ozgur E Akman, Orkun S Soyer, Declan G Bates
Published 2016-01-01

Nonlinear Dynamics in Gene Regulation Promote Robustness and Evolvability of Gene Expression Levels.

by Arno Steinacher, Declan G Bates, Ozgur E Akman, Orkun S Soyer
Published 2016-01-01

Phosphorelays provide tunable signal processing capabilities for the cell.

by Varun B Kothamachu, Elisenda Feliu, Carsten Wiuf, Luca Cardelli, Orkun S Soyer
Published 2013-01-01

Phosphate sink containing two-component signaling systems as tunable threshold devices.

by Munia Amin, Varun B Kothamachu, Elisenda Feliu, Birgit E Scharf, Steven L Porter, Orkun S Soyer
Published 2014-10-01

STRONG: metagenomics strain resolution on assembly graphs

by Christopher Quince, Sergey Nurk, Sebastien Raguideau, Robert James, Orkun S. Soyer, J. Kimberly Summers, Antoine Limasset, A. Murat Eren, Rayan Chikhi, Aaron E. Darling
Published 2021-07-01

Campylobacter jejuni 11168H Exposed to Penicillin Forms Persister Cells and Cells With Altered Redox Protein Activity

by Helen Morcrette, Andrea Kovacs-Simon, Richard K. Tennant, John Love, Sariqa Wagley, Zheng R. Yang, David J. Studholme, Orkun S. Soyer, Olivia L. Champion, Clive S. Butler, Richard W. Titball
Published 2020-10-01

An integrated computational-experimental approach reveals Yersinia pestis genes essential across a narrow or a broad range of environmental conditions

by Nicola J. Senior, Kalesh Sasidharan, Richard J. Saint, Andrew E. Scott, Mitali Sarkar-Tyson, Philip M. Ireland, Helen L Bullifent, Z. Rong Yang, Karen Moore, Petra C. F. Oyston, Timothy P. Atkins, Helen S. Atkins, Orkun S. Soyer, Richard W. Titball
Published 2017-07-01