Small RNAs in mycobacteria: an unfolding story

by Katie eHaning, Seung Hee eCho, Lydia M. Contreras, Lydia M. Contreras
Published 2014-07-01

Applying a New REFINE Approach in Zymomonas mobilis Identifies Novel sRNAs That Confer Improved Stress Tolerance Phenotypes

by Katie Haning, Sean M. Engels, Paige Williams, Margaret Arnold, Lydia M. Contreras, Lydia M. Contreras
Published 2020-01-01

Optimizing metabolite production using periodic oscillations.

by Steven W Sowa, Michael Baldea, Lydia M Contreras
Published 2014-06-01

Identification and Characterization of 5′ Untranslated Regions (5′UTRs) in Zymomonas mobilis as Regulatory Biological Parts

by Seung Hee Cho, Katie Haning, Wei Shen, Cameron Blome, Runxia Li, Shihui Yang, Lydia M. Contreras, Lydia M. Contreras
Published 2017-12-01

Signal Recognition Particle RNA Contributes to Oxidative Stress Response in Deinococcus radiodurans by Modulating Catalase Localization

by Runhua Han, Jaden Fang, Jessie Jiang, Elena K. Gaidamakova, Elena K. Gaidamakova, Rok Tkavc, Rok Tkavc, Rok Tkavc, Michael J. Daly, Lydia M. Contreras, Lydia M. Contreras
Published 2020-12-01

Multiple Small RNAs Interact to Co-regulate Ethanol Tolerance in Zymomonas mobilis

by Runhua Han, Katie Haning, Juan C. Gonzalez-Rivera, Yongfu Yang, Runxia Li, Seung Hee Cho, Ju Huang, Bobi A. Simonsen, Shihui Yang, Lydia M. Contreras, Lydia M. Contreras
Published 2020-03-01

Identification of novel sRNAs in mycobacterial species.

by Chen-Hsun Tsai, Catherine Baranowski, Jonathan Livny, Kathleen A McDonough, Joseph T Wade, Lydia M Contreras
Published 2013-01-01

RNA oxidation in chromatin modification and DNA-damage response following exposure to formaldehyde

by Juan C. Gonzalez-Rivera, Mark W. Sherman, Dongyu S. Wang, Jamie C. L. Chuvalo-Abraham, Lea Hildebrandt Ruiz, Lydia M. Contreras
Published 2020-10-01

High-throughput in vivo mapping of RNA accessible interfaces to identify functional sRNA binding sites

by Mia K. Mihailovic, Jorge Vazquez-Anderson, Yan Li, Victoria Fry, Praveen Vimalathas, Daniel Herrera, Richard A. Lease, Warren B. Powell, Lydia M. Contreras
Published 2018-10-01

A small RNA regulates pprM, a modulator of pleiotropic proteins promoting DNA repair, in Deinococcus radiodurans under ionizing radiation

by Jordan K. Villa, Runhua Han, Chen-Hsun Tsai, Angela Chen, Philip Sweet, Gabriela Franco, Respina Vaezian, Rok Tkavc, Michael J. Daly, Lydia M. Contreras
Published 2021-06-01

Uncovering Transcriptional Regulators and Targets of sRNAs Using an Integrative Data-Mining Approach: H-NS-Regulated RseX as a Case Study

by Mia K. Mihailovic, Alyssa M. Ekdahl, Angela Chen, Abigail N. Leistra, Bridget Li, Javier González Martínez, Matthew Law, Cindy Ejindu, Éric Massé, Peter L. Freddolino, Lydia M. Contreras
Published 2021-07-01

Computational evolution of an RNA-binding protein towards enhanced oxidized-RNA binding

by Juan C. Gonzalez-Rivera, Asuka A. Orr, Sean M. Engels, Joseph M. Jakubowski, Mark W. Sherman, Katherine N. O'Connor, Tomas Matteson, Brendan C. Woodcock, Lydia M. Contreras, Phanourios Tamamis
Published 2020-01-01