Correction to: GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data

by Oluwatosin Oluwadare, Max Highsmith, Douglass Turner, Erez Lieberman Aiden, Jianlin Cheng
Published 2020-08-01

GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data

by Oluwatosin Oluwadare, Max Highsmith, Douglass Turner, Erez Lieberman-Aiden, Jianlin Cheng
Published 2020-08-01

Exploring chromosomal structural heterogeneity across multiple cell lines

by Ryan R Cheng, Vinicius G Contessoto, Erez Lieberman Aiden, Peter G Wolynes, Michele Di Pierro, Jose N Onuchic
Published 2020-10-01

Delineating the <i>Tnt1</i> Insertion Landscape of the Model Legume <i>Medicago truncatula</i> cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly

by Parwinder Kaur, Christopher Lui, Olga Dudchenko, Raja Sekhar Nandety, Bhavna Hurgobin, Melanie Pham, Erez Lieberman Aiden, Jiangqi Wen, Kirankumar Mysore
Published 2021-04-01

A Postural Assessment Utilizing Machine Learning Prospectively Identifies Older Adults at a High Risk of Falling

by Katharine E. Forth, Kelly L. Wirfel, Sasha D. Adams, Nahid J. Rianon, Nahid J. Rianon, Erez Lieberman Aiden, Stefan I. Madansingh
Published 2020-12-01

Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator

by Adrian L Sanborn, Benjamin T Yeh, Jordan T Feigerle, Cynthia V Hao, Raphael JL Townshend, Erez Lieberman Aiden, Ron O Dror, Roger D Kornberg
Published 2021-04-01

H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions

by Yichao Cai, Ying Zhang, Yan Ping Loh, Jia Qi Tng, Mei Chee Lim, Zhendong Cao, Anandhkumar Raju, Erez Lieberman Aiden, Shang Li, Lakshmanan Manikandan, Vinay Tergaonkar, Greg Tucker-Kellogg, Melissa Jane Fullwood
Published 2021-01-01

Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation

by Filip Senigl, Yaakov Maman, Ravi K. Dinesh, Jukka Alinikula, Rashu B. Seth, Lubomira Pecnova, Arina D. Omer, Suhas S.P. Rao, David Weisz, Jean-Marie Buerstedde, Erez Lieberman Aiden, Rafael Casellas, Jiri Hejnar, David G. Schatz
Published 2019-12-01

Cohesin depleted cells rebuild functional nuclear compartments after endomitosis

by Marion Cremer, Katharina Brandstetter, Andreas Maiser, Suhas S. P. Rao, Volker J. Schmid, Miguel Guirao-Ortiz, Namita Mitra, Stefania Mamberti, Kyle N. Klein, David M. Gilbert, Heinrich Leonhardt, M. Cristina Cardoso, Erez Lieberman Aiden, Hartmann Harz, Thomas Cremer
Published 2020-12-01

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions

by Anjali Kaushal, Giriram Mohana, Julien Dorier, Isa Özdemir, Arina Omer, Pascal Cousin, Anastasiia Semenova, Michael Taschner, Oleksandr Dergai, Flavia Marzetta, Christian Iseli, Yossi Eliaz, David Weisz, Muhammad Saad Shamim, Nicolas Guex, Erez Lieberman Aiden, Maria Cristina Gambetta
Published 2021-02-01

ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL

by Gordana Wutz, Rene Ladurner, Brian Glenn St Hilaire, Roman R Stocsits, Kota Nagasaka, Benoit Pignard, Adrian Sanborn, Wen Tang, Csilla Várnai, Miroslav P Ivanov, Stefan Schoenfelder, Petra van der Lelij, Xingfan Huang, Gerhard Dürnberger, Elisabeth Roitinger, Karl Mechtler, Iain Finley Davidson, Peter Fraser, Erez Lieberman-Aiden, Jan-Michael Peters
Published 2020-02-01

The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758 [version 1; peer review: 2 approved]

by Dan Mead, Frank Hailer, Elisabeth Chadwick, Roberto Portela Miguez, Michelle Smith, Craig Corton, Karen Oliver, Jason Skelton, Emma Betteridge, Jale Doulcan Doulcan, Olga Dudchenko, Arina Omer, David Weisz, Erez Lieberman Aiden, Shane McCarthy, Kerstin Howe, Ying Sims, James Torrance, Alan Tracey, Richard Challis, Richard Durbin, Mark Blaxter
Published 2020-02-01

Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

by Richard J. Edwards, Matt A. Field, James M. Ferguson, Olga Dudchenko, Jens Keilwagen, Benjamin D. Rosen, Gary S. Johnson, Edward S. Rice, La Deanna Hillier, Jillian M. Hammond, Samuel G. Towarnicki, Arina Omer, Ruqayya Khan, Ksenia Skvortsova, Ozren Bogdanovic, Robert A. Zammit, Erez Lieberman Aiden, Wesley C. Warren, J. William O. Ballard
Published 2021-03-01

Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus)

by Peter A. Larsen, R. Alan Harris, Yue Liu, Shwetha C. Murali, C. Ryan Campbell, Adam D. Brown, Beth A. Sullivan, Jennifer Shelton, Susan J. Brown, Muthuswamy Raveendran, Olga Dudchenko, Ido Machol, Neva C. Durand, Muhammad S. Shamim, Erez Lieberman Aiden, Donna M. Muzny, Richard A. Gibbs, Anne D. Yoder, Jeffrey Rogers, Kim C. Worley
Published 2017-11-01

The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758 [version 1; peer review: 2 approved]

by Daniel Mead, Kathryn Fingland, Rachel Cripps, Roberto Portela Miguez, Michelle Smith, Craig Corton, Karen Oliver, Jason Skelton, Emma Betteridge, Jale Dolucan, Olga Dudchenko, Arina D. Omer, David Weisz, Erez Lieberman Aiden, Olivier Fedrigo, Jacquelyn Mountcastle, Erich Jarvis, Shane A. McCarthy, Ying Sims, James Torrance, Alan Tracey, Kerstin Howe, Richard Challis, Richard Durbin, Mark Blaxter
Published 2020-02-01

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.

by Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G Ebeling, Brian J Beliveau, Hiroshi M Sasaki, S Dean Lee, Son C Nguyen, Ruth B McCole, Shyamtanu Chattoraj, Jelena Erceg, Jumana AlHaj Abed, Nuno M C Martins, Huy Q Nguyen, Mohammed A Hannan, Sheikh Russell, Neva C Durand, Suhas S P Rao, Jocelyn Y Kishi, Paula Soler-Vila, Michele Di Pierro, José N Onuchic, Steven P Callahan, John M Schreiner, Jeff A Stuckey, Peng Yin, Erez Lieberman Aiden, Marc A Marti-Renom, C-Ting Wu
Published 2018-12-01