Revealing Unknown Protein Structures Using Computational Conformational Sampling Guided by Experimental Hydrogen-Exchange Data

by Didier Devaurs, Dinler A. Antunes, Lydia E. Kavraki
Published 2018-10-01

APE-Gen: A Fast Method for Generating Ensembles of Bound Peptide-MHC Conformations

by Jayvee R. Abella, Dinler A. Antunes, Cecilia Clementi, Lydia E. Kavraki
Published 2019-03-01

Large-Scale Structure-Based Prediction of Stable Peptide Binding to Class I HLAs Using Random Forests

by Jayvee R. Abella, Dinler A. Antunes, Cecilia Clementi, Cecilia Clementi, Lydia E. Kavraki
Published 2020-07-01

Using parallelized incremental meta-docking can solve the conformational sampling issue when docking large ligands to proteins

by Didier Devaurs, Dinler A Antunes, Sarah Hall-Swan, Nicole Mitchell, Mark Moll, Gregory Lizée, Lydia E Kavraki
Published 2019-09-01

Structural allele-specific patterns adopted by epitopes in the MHC-I cleft and reconstruction of MHC:peptide complexes to cross-reactivity assessment.

by Dinler A Antunes, Gustavo F Vieira, Maurício M Rigo, Samuel P Cibulski, Marialva Sinigaglia, José A B Chies
Published 2010-01-01

Interpreting T-Cell Cross-reactivity through Structure: Implications for TCR-Based Cancer Immunotherapy

by Dinler A. Antunes, Dinler A. Antunes, Maurício M. Rigo, Maurício M. Rigo, Martiela V. Freitas, Marcus F. A. Mendes, Marialva Sinigaglia, Gregory Lizée, Lydia E. Kavraki, Liisa K. Selin, Markus Cornberg, Markus Cornberg, Gustavo F. Vieira, Gustavo F. Vieira
Published 2017-10-01

Structural Modeling and Molecular Dynamics of the Immune Checkpoint Molecule HLA-G

by Thais Arns, Dinler A. Antunes, Jayvee R. Abella, Maurício M. Rigo, Lydia E. Kavraki, Silvana Giuliatti, Eduardo A. Donadi
Published 2020-11-01

New insights into the in silico prediction of HIV protease resistance to nelfinavir.

by Dinler A Antunes, Maurício M Rigo, Marialva Sinigaglia, Rúbia M de Medeiros, Dennis M Junqueira, Sabrina E M Almeida, Gustavo F Vieira
Published 2014-01-01