Coarse-Grained Modeling of Peptide Docking Associated with Large Conformation Transitions of the Binding Protein: Troponin I Fragment–Troponin C System

by Jacek Wabik, Mateusz Kurcinski, Andrzej Kolinski
Published 2015-06-01

Protein–Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations

by Mateusz Kurcinski, Sebastian Kmiecik, Mateusz Zalewski, Andrzej Kolinski
Published 2021-07-01

Computational reconstruction of atomistic protein structures from coarse-grained models

by Aleksandra E. Badaczewska-Dawid, Andrzej Kolinski, Sebastian Kmiecik
Published 2020-01-01

Role of Resultant Dipole Moment in Mechanical Dissociation of Biological Complexes

by Maksim Kouza, Anirban Banerji, Andrzej Kolinski, Irina Buhimschi, Andrzej Kloczkowski
Published 2018-08-01

Combining Coarse-Grained Protein Models with Replica-Exchange All-Atom Molecular Dynamics

by Andrzej Koliński, Maksim Kouza, Dominik Gront, Sebastian Kmiecik, Jacek Wabik
Published 2013-05-01

A protocol for CABS-dock protein–peptide docking driven by side-chain contact information

by Mateusz Kurcinski, Maciej Blaszczyk, Maciej Pawel Ciemny, Andrzej Kolinski, Sebastian Kmiecik
Published 2017-08-01

Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motif

by Maciej Pawel Ciemny, Mateusz Kurcinski, Maciej Blaszczyk, Andrzej Kolinski, Sebastian Kmiecik
Published 2017-08-01

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models

by Sebastian Kmiecik, Maksim Kouza, Aleksandra E. Badaczewska-Dawid, Andrzej Kloczkowski, Andrzej Kolinski
Published 2018-11-01

Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields

by Maciej Pawel Ciemny, Aleksandra Elzbieta Badaczewska-Dawid, Monika Pikuzinska, Andrzej Kolinski, Sebastian Kmiecik
Published 2019-01-01