Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities

by Ali R. Zomorrodi, Daniel Segrè
Published 2017-11-01

OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities.

by Ali R Zomorrodi, Costas D Maranas
Published 2012-02-01

k-OptForce: integrating kinetics with flux balance analysis for strain design.

by Anupam Chowdhury, Ali R Zomorrodi, Costas D Maranas
Published 2014-02-01

Microbiota and Metabolomic Patterns in the Breast Milk of Subjects with Celiac Disease on a Gluten-Free Diet

by Katherine L. Olshan, Ali R. Zomorrodi, Meritxell Pujolassos, Jacopo Troisi, Nayeim Khan, Brian Fanelli, Victoria Kenyon, Alessio Fasano, Maureen M. Leonard
Published 2021-06-01

Down-regulation of HtrA1 activates the epithelial-mesenchymal transition and ATM DNA damage response pathways.

by Ning Wang, Kristin A Eckert, Ali R Zomorrodi, Ping Xin, Weihua Pan, Debra A Shearer, Judith Weisz, Costas D Maranus, Gary A Clawson
Published 2012-01-01

Characterization of the blood microbiota in children with Celiac disease

by Isha Mehrotra, Gloria Serena, Murat Cetinbas, Victoria Kenyon, Victoria M. Martin, Stephanie G. Harshman, Ali R. Zomorrodi, Ruslan I. Sadreyev, Alessio Fasano, Maureen M. Leonard
Published 2021-12-01

Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

by Maureen M. Leonard, Hiren Karathia, Meritxell Pujolassos, Jacopo Troisi, Francesco Valitutti, Poorani Subramanian, Stephanie Camhi, Victoria Kenyon, Angelo Colucci, Gloria Serena, Salvatore Cucchiara, Monica Montuori, Basilio Malamisura, Ruggiero Francavilla, Luca Elli, Brian Fanelli, Rita Colwell, Nur Hasan, Ali R. Zomorrodi, Alessio Fasano, the CD-GEMM Team
Published 2020-09-01